NAME

MyShortRead::ChromBed - A perl class to deal with single chromosome BED file.

SYNOPSIS

  use MyShortRead::ChromBed;
  my $chrBed = new MyShortRead::ChromBed;

DESCRIPTION

  This class is used to represent and perform operations on single chromosome BED
  file. After the object has been created, it can bin the genome and return a count
  vector. Then it can also calculate sliding window counts based on the bin count
  vector. Before the object dies, you should call member function to delete the BED file.

EXPORT

  This is an object-oriented module.

SEE ALSO

  MyShortRead::MyShortRead
  MyShortRead::SRBed

AUTHOR

Li Shen, <li.shen@mssm.edu>

COPYRIGHT AND LICENSE

Copyright (C) 2010 by Li Shen

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.8 or, at your option, any later version of Perl 5 you may have available.