NAME

MyShortRead::ChromBed - A perl class to deal with single chromosome BED file.

SYNOPSIS

use MyShortRead::ChromBed;
my $chrBed = new MyShortRead::ChromBed;

DESCRIPTION

This class is used to represent and perform operations on single chromosome BED
file. After the object has been created, it can bin the genome and return a count
vector. Then it can also calculate sliding window counts based on the bin count
vector. Before the object dies, you should call member function to delete the BED file.

EXPORT

This is an object-oriented module.

SEE ALSO

MyShortRead::MyShortRead
MyShortRead::SRBed

Mailing list: https://groups.google.com/forum/#!forum/diffreps-discuss

Web site: https://code.google.com/p/diffreps/

AUTHOR

Li Shen, <shenli.sam@gmail.com>

COPYRIGHT AND LICENSE

Copyright (C) 2010-2013 by Li Shen

diffReps goes under GNU GPL v3: http://www.gnu.org/licenses/gpl.html