Commonly used Perl subroutines for my bioinformatics work.

Math routines used for bioinformatics.

methods to perform negative binomial tests.

A perl class to deal with single chromosome BED file.

My Perl library to deal with nextgen short read data.

A perl class to deal with a short read dataset in BED file.

Perl extension for genomic annotations

Module for convenient access to genome statistics, such as chromosome lengths.

class to deal with a sliding window. diffReps::ChromaModSite - class to deal with chromatin modification site, inherited from SlideWindow. diffReps::RegionList - class for a list of modification regions.

class to store and manipulate differential sites. diffReps::ClustList - class to deal with a cluster of differential sites(hotspots).