NAME

MyShortRead::SRBed - A perl class to deal with a short read dataset in BED file.

SYNOPSIS

  use MyShortRead::SRBed;
  my $srBed = new MyShortRead::SRBed;

DESCRIPTION

  This class is used to extract information from a short read BED file. It first
  separates the whole file into small pieces of chromosome files and then do bin
  and sliding window count. Before the object exists, you should call its member
  function to delete all temporary chromosome files.

EXPORT

  This is an object-oriented module.

SEE ALSO

  MyShortRead::MyShortRead
  MyShortRead::ChromBed

AUTHOR

Li Shen, <li.shen@mssm.edu>

COPYRIGHT AND LICENSE

Copyright (C) 2010 by Li Shen

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.8 or, at your option, any later version of Perl 5 you may have available.