NAME

bene.pl - A command-line tool for Bio::ExtractNE

OPTIONS

> bene.pl -g -id -id -file

  -d      Download abstracts (boolean option)
  -e      Extract named entities only
  -A      Output directory for fetched abstracts
  -i      PMID  (You can pass in multiple IDs)
  -f      Extract from abstract file or download PMIDs in the file.
  -E      Output directory for extracted named entities.
  -D      Data dumping method: (YAML or Data::Dumper) (Defaults to YAML)

Non-existing directories are created automatically.

EXAMPLES

Fetch PMID 15043991, store the abstract in ./abstracts/, and extract named entites in ./named_entities

> bene.pl -d -e -i 15043991 -A ./abstracts/ -E ./named_entities

Download PMIDs that are in PMID_FILE, and store abstracts in ./abstracts

> bene.pl -d -f PMID_FILE -A ./abstracts

> bene.pl -e -A ./abstracts/ -E ./named_entities

SEE ALSO

Bio::ExtractNE

COPYRIGHT AND LICENSE

Copyright (C) 2004 Yung-chung Lin (a.k.a. xern) <xern@cpan.org> and Chin-lin Peng

This package is free software; you can redistribute it and/or modify it under the same terms as Perl itself