Changes for version 1.02 - 2004-10-15

  • Code clean-up
  • Added some more features.
  • Dictionary update.
  • Rewritten Swissprot parser.

Documentation

A command-line tool for Bio::ExtractNE

Modules

Extract biological named entities from PUBMED abstracts
Detect interaction events in text
Class for accessing GAPSCORE RPC service
Fetch abstracts from PUBMED
Fetch Full SwissProt Data
Package for creating dictionary

Provides

in lib/Bio/ExtractNE/CommonWords.pm
in lib/Bio/ExtractNE/Dict.pm
in lib/Bio/ExtractNE/EventPattern.pm
in lib/Bio/ExtractNE/Filter.pm
in lib/Bio/ExtractNE/GAPSCORE.pm
in lib/Bio/ExtractNE/GAPSCORE/AbbreviationMatcher/AbbreviationAligner.pm
in lib/Bio/ExtractNE/GAPSCORE/AbbreviationMatcher/AbbreviationCandidateFinder.pm
in lib/Bio/ExtractNE/GAPSCORE/FullNameExtender.pm
in lib/Bio/ExtractNE/GAPSCORE/Scorer.pm
in lib/Bio/ExtractNE/GAPSCORE/Scorer/GeneralCase.pm
in lib/Bio/ExtractNE/GAPSCORE/Scorer/GeneralCase/Appearance.pm
in lib/Bio/ExtractNE/GAPSCORE/Scorer/GeneralCase/Appearance/GeneName.pm
in lib/Bio/ExtractNE/GAPSCORE/Scorer/GeneralCase/Appearance/GeneSymbol.pm
in lib/Bio/ExtractNE/GAPSCORE/Scorer/GeneralCase/Classifier.pm
in lib/Bio/ExtractNE/GAPSCORE/Scorer/SpecialCase.pm
in lib/Bio/ExtractNE/GAPSCORE/Scorer/SpecialCase/EnzymeMatcher.pm
in lib/Bio/ExtractNE/GAPSCORE/Scorer/SpecialCase/P450Matcher.pm
in lib/Bio/ExtractNE/GAPSCORE/TokenFilter.pm
in lib/Bio/ExtractNE/GAPSCORE/TokenFilter/POSFilter.pm
in lib/Bio/ExtractNE/GAPSCORE/TokenFilter/PatternFilter.pm
in lib/Bio/ExtractNE/GAPSCORE/TokenFilter/SpecificWordFilter.pm
in lib/Bio/ExtractNE/GAPSCORE/TokenStreamBuilder.pm
in lib/Bio/ExtractNE/GAPSCORE/TokenStreamBuilder/SentenceSpliter.pm
in lib/Bio/ExtractNE/GAPSCORE/TokenStreamBuilder/Tokenizer.pm
in lib/Bio/ExtractNE/HandPicked.pm
in lib/Bio/ExtractNE/Recognizer.pm
in lib/Bio/ExtractNE/SplitSentence.pm
in lib/Bio/ExtractNE/Stoplist.pm
in lib/Bio/ExtractNE/Tokenize.pm
in lib/Bio/ExtractNE/Vars.pm