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App-Egaz-0.1.2
River stage zero No dependents

Changes for version 0.1.2 - 2018-04-16

  • Create chr.fasta and chr.fasta.fai in `egaz prepseq`
  • Add `egaz fas2vcf`
  • `egaz template`
    • Fix --taxon
    • Symlink chr.fasta in 3_proc_cmd.sh
    • Add 4_vcf.sh
    • Add 4_circos.sh
    • Add prebuilt karyotype files
    • Add 7_chr_length.sh
  • Add optional dependencies

Modules

App::Egaz
Backend of Easy Genome Aligner

Provides

App::Egaz::Command::blastlink
in lib/App/Egaz/Command/blastlink.pm
App::Egaz::Command::blastmatch
in lib/App/Egaz/Command/blastmatch.pm
App::Egaz::Command::blastn
in lib/App/Egaz/Command/blastn.pm
App::Egaz::Command::exactmatch
in lib/App/Egaz/Command/exactmatch.pm
App::Egaz::Command::fas2vcf
in lib/App/Egaz/Command/fas2vcf.pm
App::Egaz::Command::formats
in lib/App/Egaz/Command/formats.pm
App::Egaz::Command::lastz
in lib/App/Egaz/Command/lastz.pm
App::Egaz::Command::lav2axt
in lib/App/Egaz/Command/lav2axt.pm
App::Egaz::Command::lav2psl
in lib/App/Egaz/Command/lav2psl.pm
App::Egaz::Command::lpcnam
in lib/App/Egaz/Command/lpcnam.pm
App::Egaz::Command::masked
in lib/App/Egaz/Command/masked.pm
App::Egaz::Command::maskfasta
in lib/App/Egaz/Command/maskfasta.pm
App::Egaz::Command::multiz
in lib/App/Egaz/Command/multiz.pm
App::Egaz::Command::normalize
in lib/App/Egaz/Command/normalize.pm
App::Egaz::Command::partition
in lib/App/Egaz/Command/partition.pm
App::Egaz::Command::plottree
in lib/App/Egaz/Command/plottree.pm
App::Egaz::Command::prepseq
in lib/App/Egaz/Command/prepseq.pm
App::Egaz::Command::raxml
in lib/App/Egaz/Command/raxml.pm
App::Egaz::Command::repeatmasker
in lib/App/Egaz/Command/repeatmasker.pm
App::Egaz::Command::template
in lib/App/Egaz/Command/template.pm
App::Egaz::Common
in lib/App/Egaz/Common.pm

Other files