NAME

App::Rangeops - operates ranges and links of ranges on chromosomes

SYNOPSIS

rangeops <command> [-?h] [long options...]
    -? -h --help    show help

Available commands:

  commands: list the application's commands
      help: display a command's help screen

    circos: range links to circos links or highlight file
     clean: replace ranges within links, incorporate hit strands and remove nested links
   connect: connect bilaterial links into multilateral ones
    create: create blocked fasta files from range links
    filter: filter links by numbers of ranges or length difference
     merge: merge overlapped ranges via overlapping graph
   replace: replace ranges within links and incorporate hit strands
      sort: sort links and ranges within links

See rangeops commands for usage information.

DESCRIPTION

Types of links:

Bilateral links

I(+):13063-17220	I(-):215091-219225
I(+):139501-141431	XII(+):95564-97485

Bilateral links with hit strand

I(+):13327-17227	I(+):215084-218967	-
I(+):139501-141431	XII(+):95564-97485	+

Multilateral links

II(+):186984-190356	IX(+):12652-16010	X(+):12635-15993

Merge files aren't links

I(-):13327-17227	I(+):13327-17227

Steps:

sort
  |
  v
clean -> merge
  |     /
  |  /
  v
clean
  |
  V
connect
  |
  v
filter

AUTHOR

Qiang Wang <wang-q@outlook.com>

COPYRIGHT AND LICENSE

This software is copyright (c) 2016 by Qiang Wang.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.