NAME
MS::Reader::MzML::Chromatogram - An MzML chromatogram object
SYNOPSIS
use MS::Reader::MzML;
my $run = MS::Reader::MzML->new('run.mzML');
my $tic = $run->get_tic; # an MS::Reader::MzML::Chromatogram object
my $id = $tic->id;
my $rt = $tic->rt;
my $int = $tic->int;
# print the underlying data structure
$tic->dump;
}DESCRIPTION
MS::Reader::MzML::Chromatogram objects represent chromatograms parsed or calculated from an mzML file. The constructor is not intended to be used directly but rather by via methods of MS::Reader::MzML.
METHODS
id
my $id = $chrom->id;Returns the native ID of the chromatogram, or undefined if not available
rt
my $rt = $chrom->rt;
for (@$rt) { # do something }Returns an array reference to the retention time data array (in SECONDS)
int
my $int = $chrom->int;
for (@$int) { # do something }Returns an array reference to the peak intensity data array
param, get_array
CAVEATS AND BUGS
The API is in alpha stage and is not guaranteed to be stable.
Please reports bugs or feature requests through the issue tracker at https://github.com/jvolkening/p5-MS/issues.
SEE ALSO
AUTHOR
Jeremy Volkening <jdv@base2bio.com>
COPYRIGHT AND LICENSE
Copyright 2015-2016 Jeremy Volkening
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.