Changes for version 1.02 - 2025-02-02
- Renamed 'Align.pm' to 'Compare.pm'
- Expanded 'rank.txt' with new columns: REFERENCE-VARS, TARGET-VARS, INTERSECT, INTERSECT-RATE(%), COMPLETENESS(%)
- Renamed '--max-number-var' to '--max-number-vars' to prevent mistakes
- Moved t/plot.t to xt/ as Python libraries caused issues in GitHub builds
- Added "interpretations" to PXF in 'bff-pxf-plot'
- Introduced '--retain-excluded-phenotypicFeatures' to include "excluded": true in comparisons
- Added '--precomputed-ref-prefix' for pre-computed cohort data
- Enabled support for .gz JSON/YAML inputs
- Added 'share/diseases' with disease-based reference cohorts
- Introduced '--max-matrix-items-in-ram' as option (+ config) to speed up jobs for users with enough RAM
Modules
A module that performs semantic similarity in PXF/BFF data structures and beyond (JSON|YAML)
Provides
in utils/bff_pxf_simulator/Ontologies.pm
in lib/Pheno/Ranker/Compare.pm
in lib/Pheno/Ranker/Graph.pm
in lib/Pheno/Ranker/IO.pm
in lib/Pheno/Ranker/Stats.pm