NAME
Bio::MAGETAB::Util::Writer - Export of MAGE-TAB objects.
SYNOPSIS
use Bio::MAGETAB::Util::Writer;
my $writer = Bio::MAGETAB::Util::Writer->new({
magetab => $magetab_container,
});
$writer->write();DESCRIPTION
This class is designed to export all the MAGE-TAB objects from a given Bio::MAGETAB container, creating as many IDFs, ADFs and SDRFs as are necessary to do so.
Export of the individual MAGE-TAB components is delegated to separate writer classes. See the ADF, IDF and SDRF classes if you want more control over the export process.
ATTRIBUTES
- magetab
-
The Bio::MAGETAB container to export. This is a required attribute. See the Bio::MAGETAB class for more information on this container class.
- export_version
-
A string indicating which version of the MAGE-TAB format to export; currently restricted to "1.0" or "1.1". The default is "1.1".
METHODS
- write
-
Exports all objects into their respective MAGE-TAB components. Filenames are automatically generated from Investigation title, ArrayDesign uri (or name) and SDRF uri attributes.
SEE ALSO
AUTHOR
Tim F. Rayner <tfrayner@gmail.com>
LICENSE
This library is released under version 2 of the GNU General Public License (GPL).