Changelog for Bio::MAGETAB
--------------------------
1.31 Bio::MAGETAB-1.31.tar.gz Replacing the old DateTime::Format::DateManip module
with DateTime::Format::Flexible, which appears to be
maintained more responsively.
1.30 Bio::MAGETAB-1.30.tar.gz Fix for FactorValue and Characteristics Measurement bug
(https://rt.cpan.org/Public/Bug/Display.html?id=94398).
1.28 Bio::MAGETAB-1.28.tar.gz Minor bug fixes for assorted test case failures;
no substantive changes in code behaviour.
1.27 Bio::MAGETAB-1.27.tar.gz Change to the default v1.1 SDRF export such that all
assays are represented by "Assay Name" columns, and
all Assay and Hybridization Name columns will include
Technology Type. The v1.0 export remains unchanged.
Added the EFO term "array assay" to the Technology Type
terms recognised as being attached to hybridisations.
1.26 Bio::MAGETAB-1.26.tar.gz Re-release incorporating Module::Install 1.06 to fix a
known bug when installing using perl 5.16. No other
code changes.
1.25 Bio::MAGETAB-1.25.tar.gz Fixing SDRF parser to correctly recognise Array Design
columns associated with Assay Name.
1.24 Bio::MAGETAB-1.24.tar.gz Making the parsed MAGE-TAB document version attribute
accessible from in the Reader classes.
1.23 Bio::MAGETAB-1.23.tar.gz Several important bug fixes provided by Anna Farne.
1.22 Bio::MAGETAB-1.22.tar.gz Another attempt to solve the error reporting problem,
newly reintroduced by the loss of previously-documented
functions from Parse::RecDescent (see below). Improved
error message formatting.
1.21 Bio::MAGETAB-1.21.tar.gz Fixed redirection of Parse::RecDescent error reporting to
use the now-documented mechanisms for doing so.
1.20 Bio::MAGETAB-1.20.tar.gz Added the option to link from ParameterValue to
ControlledTerm as per June 2009 v1.1 MAGE-TAB
specification.
Default search path for SDRF/ADF/DataMatrix switched
from current working directory to IDF directory.
Tests added for Bio::MAGETAB::Util::Reader class.
Possible fix for URI test errors when running on MSWin32.
1.13 Bio::MAGETAB-1.13.tar.gz Fixed minor FileHandle type coercion bug which led to an
unsightly verbose warning in Moose::Meta::Attribute.
1.12 Bio::MAGETAB-1.12.tar.gz Migrated from the deprecated Moose::Policy module to using
MooseX::FollowPBP.
1.11 Bio::MAGETAB-1.11.tar.gz Minor fixes to IDF and SDRF export to comply with a stricter
interpretation of the MAGE-TAB specification.
1.10 Bio::MAGETAB-1.10.tar.gz Added export_version attribute to the Writer classes to
support export of either MAGE-TAB v1.0 or MAGE-TAB v1.1.
Corrected the behaviour of the ADF Writer class when
exporting [mapping] sections.
1.00 Bio::MAGETAB-1.00.tar.gz Bug fix for export of IDF containing no multi-value
fields. Minor POD fixes.
0.99 Bio::MAGETAB-0.99.tar.gz Added support for IDF "MAGE-TAB Version" tag. Now
compliant with the second draft of the MAGE-TAB
v1.1 specification document.
0.98 Bio::MAGETAB-0.98.tar.gz Minor fixes to enable Bio::MAGETAB::Types to work
with the most recent Moose and MooseX::Types modules.
0.97 Bio::MAGETAB-0.97.tar.gz Merged magetab and magetab-util packages together for
convenience (see below for old Bio::MAGETAB::Util
changelog).
Minor bug fixes.
New class to automate fixes to ArrayExpress MAGE-TAB
documents.
0.96 Bio::MAGETAB-0.96.tar.gz Made LabeledExtract->label attribute optional. This
better agrees with the MAGE-TAB specification, even
if it doesn't make much sense in reality. This
change makes SDRF parsing slightly simpler.
0.95 Bio::MAGETAB-0.95.tar.gz Added BaseClass to the MagicDraw UML model document.
Renamed Feature blockColumn and column attributes
to blockCol and col respectively; this avoids
naming conflicts in some ORM implementations.
Renamed all "type" attributes, similarly to
avoid conflicts.
Converted Source providers and ProtocolApplication
performers to fully-fledged Contact objects.
Relaxed requirement for measurement on ParameterValue.
Added POD coverage tests.
0.91 Bio::MAGETAB-0.91.tar.gz Added class documentation (POD).
0.9 Bio::MAGETAB-0.9.tar.gz Initial public release; API almost finalised.
Changelog for Bio::MAGETAB::Util, prior to merging with Bio::MAGETAB
--------------------------------------------------------------------
0.4 Bio-MAGETAB-Util-0.4.tar.gz Added ADF, IDF and SDRF export
functions.
Improved GraphViz visualisation API.
Minor parser bug fixes.
0.31 Bio-MAGETAB-Util-0.31.tar.gz Various bug fixes based on tests
with real-world IDFs and SDRFs.
Improved object identity heuristics.
Full MySQL database schema and
unloader script.
0.3 Bio-MAGETAB-Util-0.3.tar.gz Initial public release