NAME
Bio::MAGETAB::Util::Reader::IDF - IDF parser class.
SYNOPSIS
use Bio::MAGETAB::Util::Reader::IDF;
my $parser = Bio::MAGETAB::Util::Reader::IDF->new({
uri => $idf_filename,
});
my $investigation = $parser->parse();
DESCRIPTION
This class is used to parse IDF files. It can be used on its own, but more often you will want to use the main Bio::MAGETAB::Util::Reader class which handles extended parsing options more transparently.
ATTRIBUTES
See the TagValueFile class for superclass attributes.
- magetab_object
-
A Bio::MAGETAB::Investigation object. This can either be set upon instantiation, or a new object will be created for you. It can be retrieved at any time using
get_magetab_object
. - document_version
-
A string representing the MAGE-TAB version used in the parsed document. This is populated by the parse() method.
METHODS
- parse
-
Parse the IDF pointed to by
$self->get_uri()
. Returns the Bio::MAGETAB::Investigation object updated with the IDF contents.
SEE ALSO
Bio::MAGETAB::Util::Reader::TagValueFile Bio::MAGETAB::Util::Reader::Tabfile Bio::MAGETAB::Util::Reader Bio::MAGETAB::Investigation
AUTHOR
Tim F. Rayner <tfrayner@gmail.com>
LICENSE
This library is released under version 2 of the GNU General Public License (GPL).