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MS-0.207003
River stage zero No dependents

Changes for version 0.207003 - 2023-10-22

  • Update Uniprot REST URLs

Modules

MS
Namespace for mass spectrometry-related libraries
MS::CV
interface to HUPO PSI controlled vocabularies
MS::Mass
core functions for molecular mass calculations
MS::PepInfo
utility functions for proteomics calculations
MS::Peptide
A class representing peptide species for proteomic analysis
MS::Protein
A class representing protein species for proteomic analysis
MS::Reader
Base class for all file parsers
MS::Reader::ImzML
A simple but complete imzML parser
MS::Reader::ImzML::Spectrum
An ImzML spectrum object
MS::Reader::MGF
A simple but complete MGF parser
MS::Reader::MGF::Spectrum
An MGF spectrum object
MS::Reader::MSn
A simple but complete MS1/MS2 parser
MS::Reader::MSn::Spectrum
An MSn spectrum object
MS::Reader::MzIdentML
A simple but complete mzIdentML parser
MS::Reader::MzIdentML::DBSequence
mzIdentML database sequence object
MS::Reader::MzIdentML::Peptide
mzIdentML peptide object
MS::Reader::MzIdentML::PeptideEvidence
mzIdentML peptide evidence object
MS::Reader::MzIdentML::ProteinAmbiguityGroup
mzIdentML protein group object
MS::Reader::MzIdentML::SequenceItem
base class for SequenceCollection children
MS::Reader::MzIdentML::SpectrumIdentificationResult
mzIdentML result object
MS::Reader::MzML
A simple but complete mzML parser
MS::Reader::MzML::Chromatogram
An MzML chromatogram object
MS::Reader::MzML::Record
The base class for MzML spectrum and chromatogram records
MS::Reader::MzML::Spectrum
An MzML spectrum object
MS::Reader::MzQuantML
A simple but complete mzQuantML parser
MS::Reader::MzXML
A simple but complete mzXML parser
MS::Reader::MzXML::Spectrum
An MzXML spectrum object
MS::Reader::PepXML
A simple but complete pepXML parser
MS::Reader::PepXML::Result
pepXML search result object
MS::Reader::ProtXML
A simple but complete protXML parser
MS::Reader::ProtXML::Group
A protXML protein group
MS::Reader::XML
Base class for XML-based parsers
MS::Reader::XML::CV
Base class for XML-based parsers with support for referenceableParamGroups
MS::Reader::XML::Record
Base class for XML-based records
MS::Reader::XML::Record::CV
Base class for XML-based records with support for referenceableParamGroups
MS::Search::DB
A class to facilitate construction of MS/MS protein search databases
MS::Search::DB::Source::uniprot
interface for Uniprot downloads
MS::Spectrum
Base class for spectrum objects

Other files