Changes for version 0.0206 - 2011-05-12
- added support for v.60 (Orbitrap Velos)
- added precursor intensity search to Finnigan::Scan::CentroidList
- proper handling of empty scans
Documentation
decode the base64-encoded scan data in an mzXML or mzML file
decode the base64-encoded scan data in an mzXML or mzML file
decode the CASInfo structure in a Finnigan raw file
print the error log entries from a Finnigan raw file
decode the file header in a Finnigan raw file
examine the ScanIndexEntry structures in a Finnigan raw file
print or dump the instrument IDs found a Finnigan raw file
list or dump the instrument log entries in a Finnigan raw file
decode the embedded method file in a Finnigan raw file
convert a Finnigan raw file to mzML
convert a Finnigan raw file to mzXML
list or dump the ScanParameters records in a Finnigan raw file
decode the RawFileInfo structure in a Finnigan raw file
decode the RunHeader structure in a Finnigan raw file
examine scan data in a single MS scan
list the profile or centroids in a single MS scan
dump the scan event hirerarchy of a Finnigan raw file
decode the SeqRow structure in a Finnigan raw file
examine the ScanEvent structures in a Finnigan raw file "trailer"
list or dump the instrument settings and calibration data from a Finnigan raw file
Modules
Thermo/Finnigan mass spec data decoder
a decoder for AuditTag, a substructure found in the Finnigan file headers
a decoder for autosampler data
a decoder for CASInfoPreamble, a numeric autosampler descriptor
a generic binary structure decoder
a decoder for Error, an error log record
a decoder for Finnigan file headers
a decoder for FractionCollector, a mass range object in ScanEvent
a decoder for GenericDataDescriptor, a key to decoding GenericRecord fields
a decoder for GenericDataHeader -- a key to decoding generic data records
a decoder for data structures defined by GenericDataHeader
a decoder for the injection parameters in a sequence table row
a decoder for InstID, a set of instrument identifiers
a decoder for a single Instrument Log record
a decoder for the outer MethodFile container
a decoder for Double-Indirect FAT, a block allocation structure in Microsoft OLE2
a decoder for the Microsoft OLE2 directory entry
a decoder for FAT Sector, a block allocation structure in OLE2
a decoder for Microsoft structured data files (OLE2 a.k.a. CDF)
a decoder for the Microsoft OLE2 header structure
a decoder for the Property structure in Microsoft OLE2
a decoder for PacketHeader, a substructure of ScanDataPaket
a full-featured decoder for a single (M/z, abundance) pair, an element of the PeakList structure
a decoder for PeaksList, the list of peak centroids
a full-featured decoder for Finnigan scan profiles
a full-featured decoder for a single ProfileChunk structure
a decoder for RawFileInfo, the primary index structure
a decoder for RawFileInfoPreamble, the binary data part of RawFileInfo
a decoder for Reaction, the container for precursor mass and fragmentation energy
a decoder for RunHeader, the primary file index structure
a decoder for SampleInfo, the primary file index structure
a lightweight scan data decoder
a decoder for ScanEvent, a detailed scan descriptor
a decoder for ScanEventPreamble, the byte array component of ScanEvent
a decoder for ScanEventTemplate, the prototype scan descriptor
a decoder for ScanIndexEntry, a linked list element pointing to scan data
a decoder for ScanParameters, a GenericRecord containing various scan meta-data.
a decoder for one row of the sequencer table
Provides
in lib/Finnigan/Scan.pm
in lib/Finnigan/Scan.pm
in lib/Finnigan/Scan.pm