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BioX-Seq-0.008004
River stage one • 3 direct dependents • 4 total dependents

Changes for version 0.008004 - 2022-01-21

  • Add check for out-of-date faidx files

Modules

BioX::Seq
a (very) basic biological sequence object
BioX::Seq::Fetch
Fetch records from indexed FASTA non-sequentially
BioX::Seq::Stream
Parse FASTA and FASTQ files sequentially
BioX::Seq::Stream::FASTA
the FASTA parser for BioX::Seq:Stream;
BioX::Seq::Stream::FASTQ
the FASTQ parser for BioX::Seq:Stream;
BioX::Seq::Stream::TwoBit
the TwoBit parser for BioX::Seq:Stream;
BioX::Seq::Utils
miscellaneous sequence-related functions

Other files