NAME

Bio::AutomatedAnnotation::External::Cmscan - Run and parse the output of cmscan

VERSION

version 1.182685

SYNOPSIS

Run and parse the output of cmscan use Bio::AutomatedAnnotation::External::Cmscan;

 my $obj = Bio::AutomatedAnnotation::External::Cmscan->new(
   cmdb       => 'database/cm/Bacteria',
   input_file => 'abc.fa',
   exec       => 'cmscan',
   version    => '1.1',
   cpus       => 1,
   evalue     => 1E-6,
 );
$obj->features;

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007