/ 
OWL-Simple-0.41
River stage one • 1 direct dependent • 1 total dependent
/ OWL::Simple::Parser

NAME

OWL::Simple::Parser

SYNOPSIS

use OWL::Simple::Parser;

# load Experimental Factor Ontology
my $parser = OWL::Simple::Parser->new(  owlfile => 'efo.owl',
		synonym_tag => 'alternative_term' );

# parse file
$parser->parse();

# iterate through all the classes
for my $id (keys %{ $parser->class }){
	my $OWLClass = $parser->class->{$id};
	print $id . ' ' . $OWLClass->label . "\n";
	
	# list synonyms
	for my $syn (@{ $OWLClass->synonyms }){
		print "\tsynonym - $syn\n";
	}
	
	# list definitions
	for my $def (@{ $OWLClass->definitions }){
		print "\tdef - $def\n";
	}
	
	# list parents
	for my $parent (@{ $OWLClass->subClassOf }){
		print "\tsubClassOf - $parent\n";
	}
}

DESCRIPTION

A simple OWL parser loading accessions, labels and synonyms and exposes them as a collection of OWL::Simple::Class objects.

In the constructor specify the owlfile to be loaded and an optional synonym_tag used in the ontology (example FULL_SYN for NCI Thesaurus).

METHODS

class_count()

Number of classes loaded by the parser.

synonyms_count()

Number of synonyms loaded by the parser.

class

Hash collection of all the OWL::Simple::Class objects

AUTHOR

Tomasz Adamusiak 2010

COPYRIGHT AND LICENSE

Copyright (c) 2010 European Bioinformatics Institute. All Rights Reserved.

This module is free software; you can redistribute it and/or modify it under GPLv3.

This software is provided "as is" without warranty of any kind.