/ 
App-Sandy-0.25
River stage zero No dependents
/ App::Sandy::Command::Expression::Add

NAME

App::Sandy::Command::Expression::Add - expression subcommand class. Add an expression-matrix to the database.

VERSION

version 0.25

SYNOPSIS

sandy expression add -f <entry name> [-s <source>] FILE

Arguments:
 an expression-matrix file

Mandatory options:
 -f, --expression-matrix    an expression-matrix name

Options:
 -h, --help                 brief help message
 -H, --man                  full documentation
 -v, --verbose              print log messages
 -s, --source               expression-matrix source detail for database

DESCRIPTION

Add an expression-matrix to the database. A valid expression-matrix is a file with two columns. The first column is for the seqid and the second column is for the raw count. The counts will be treated as weights.

INPUT

A two-columns whitespace separated file, where the first column is the transcript id, or the gene id, and the second column is the raw counts.

===> my_custom_expression_matrix.txt
#feature	count
ENST00000000233.9	2463
ENST00000000412.7	2494
ENST00000000442.10	275
ENST00000001008.5	5112
ENST00000001146.6	637
ENST00000002125.8	660
ENST00000002165.10	478
ENST00000002501.10	57
ENST00000002596.5	183
...

AUTHORS

  • Thiago L. A. Miller <tmiller@mochsl.org.br>

  • J. Leonel Buzzo <lbuzzo@mochsl.org.br>

  • Felipe R. C. dos Santos <fsantos@mochsl.org.br>

  • Helena B. Conceição <hconceicao@mochsl.org.br>

  • Rodrigo Barreiro <rbarreiro@mochsl.org.br>

  • Gabriela Guardia <gguardia@mochsl.org.br>

  • Fernanda Orpinelli <forpinelli@mochsl.org.br>

  • Rafael Mercuri <rmercuri@mochsl.org.br>

  • Rodrigo Barreiro <rbarreiro@mochsl.org.br>

  • Pedro A. F. Galante <pgalante@mochsl.org.br>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2023 by Teaching and Research Institute from Sírio-Libanês Hospital.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007