NAME

App::Sandy::Command::Variation::Add - variation subcommand class. Add structural variation to the database.

VERSION

version 0.19

SYNOPSIS

sandy variation add -a <entry name> [-s <source>] FILE

Arguments:
 a file (VCF or a structural variation file)

Mandatory options:
 -a, --structural-variation    a structural variation name

Options:
 -h, --help                    brief help message
 -u, --man                     full documentation
 -v, --verbose                 print log messages
 -s, --source                  structural variation source detail for database
 -n, --sample-name             the VCF sample column to be used

DESCRIPTION

Add structural-variation to the database.

AUTHORS

• Thiago L. A. Miller <tmiller@mochsl.org.br>

• J. Leonel Buzzo <lbuzzo@mochsl.org.br>

• Gabriela Guardia <gguardia@mochsl.org.br>

• Fernanda Orpinelli <forpinelli@mochsl.org.br>

• Pedro A. F. Galante <pgalante@mochsl.org.br>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2018 by Teaching and Research Institute from Sírio-Libanês Hospital.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007