NAME
Bio::MAGETAB::ArrayDesign - MAGE-TAB array design class
SYNOPSIS
use Bio::MAGETAB::ArrayDesign;DESCRIPTION
This class is used to store information about array designs in MAGE-TAB. This class can represent information from an ADF, or a reference to an array design in a database. See the DatabaseEntry class for superclass methods.
ATTRIBUTES
- name (required)
-
The name of the array design (data type: String).
- version (optional)
-
The version of the array design (data type: String).
- uri (optional)
-
A URI for the array design (data type: Uri).
- provider (optional)
-
The provider (typically the manufacturer) of the array design (data type: String).
- technologyType (optional)
-
The technology type of the array (data type: Bio::MAGETAB::ControlledTerm).
- surfaceType (optional)
-
The surface type of the array (data type: Bio::MAGETAB::ControlledTerm).
- substrateType (optional)
-
The substrate type of the array (data type: Bio::MAGETAB::ControlledTerm).
- printingProtocol (optional)
-
The protocol used for printing the array (data type: String).
- sequencePolymerType (optional)
-
The sequence polymer type of the array (data type: Bio::MAGETAB::ControlledTerm).
- designElements (optional)
-
A list of array design elements (Features, Reporters and CompositeElements) describing the array (data type: Bio::MAGETAB::DesignElement).
- comments (optional)
-
A list of user-defined comments for the array design (data type: Bio::MAGETAB::Comment).
METHODS
Each attribute has accessor (get_*) and mutator (set_*) methods, and also predicate (has_*) and clearer (clear_*) methods where the attribute is optional. Where an attribute represents a one-to-many relationship the mutator accepts an arrayref and the accessor returns an array.
SEE ALSO
AUTHOR
Tim F. Rayner <tfrayner@gmail.com>
LICENSE
This library is released under version 2 of the GNU General Public License (GPL).