Changes for version 0.63 - 2004-08-11
- GO::View
- Fix to bug that was causing some significant nodes to not have the correct color, and thus making the image somewhat misleading - thanks to the folks at Princeton for spotting it, and to Shuai Weng at SGD for providing a fix in record time.
- fixed bug in reading of configuration file, that resulted from minMapWidth being a substring of minMapWidth4OneLineKey. This now stops a warning being printed.
- Added some comments to GO::View, as a start to begin to fully comment all the code - there's a long way to go until I understand fully how GO::View works. Then I can add postscript output for publication qaulity figures...
Modules
abstract base class defining interface for how Annotation information should be provided
parses a gene annotation file
provides information about a node in the Gene Ontology
abstract base class providing API for the provision on Gene Ontology information
Provides API for retrieving data from Gene Ontology files
identify GO nodes that annotate a group of genes with a significant p-value
prints an html table of the results of GO::TermFinder
prints results of GO::TermFinder as a text report
simply utility module for dealing with file parsing
provides some general utilities for clients of other GO classes
Creates a gif or png image for visualizing the GO DAG
a helper class for GO::View to deal with the image
