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GO-TermFinder-0.30
River stage zero No dependents

Changes for version 0.3 - 2003-11-26

  • GO::AnnotationProvider::AnnotationParser
  • Extensive reworking of the code, such that it is now case insensitive, with certain caveats. See the pod for that module for more details.
  • GO::TermFinder
  • No longer considers the root node, or its child (the aspect) as hypotheses, as they are known a priori to have a p-value of 1.
  • GO::Node
  • Added lengthOfShortestPathToRoot and meanLengthOfPathsToRoot methods.
  • added in new tests for the AnnotationParser that make sure that the behaviour with respect to case insensitivity is correct.

Modules

GO::AnnotatedGene
GO::Annotation
GO::AnnotationProvider
abstract base class defining interface for how Annotation information should be provided
GO::AnnotationProvider::AnnotationParser
parses a gene annotation file
GO::Node
GO::OntologyProvider
abstract base class providing API for the provision on Gene Ontology information
GO::OntologyProvider::OntologyParser
GO::Reference
GO::TermFinder
identify GO nodes that annotate a group of genes with a significant p-valueå

Examples

Other files