Changes for version 0.05 - 2012-12-26
- -modification to scoring equations for translocation hallmark -added maximum number of translocation chromosomes parameter -added check for tailing backslash on directory paths -removed POD method headers -tp53 score can only be achieved by setting the command line option, tp53 mutations that are discovered will be reported but will have not affect on scores -added sample data directory with example run guide
Modules
a script for analyzing next-generation sequencing data
Other files
- Changes
- MANIFEST
- META.yml
- Makefile.PL
- README
- sample_data/.svn/prop-base/example_guide.txt.svn-base
- sample_data/.svn/text-base/example_guide.txt.svn-base
- sample_data/cnv/.svn/prop-base/sample_cnv.spc.svn-base
- sample_data/cnv/.svn/text-base/sample_cnv.spc.svn-base
- sample_data/cnv/sample_cnv.spc
- sample_data/example_guide.txt
- sample_data/indels/.svn/prop-base/sample_indels.vcf.svn-base
- sample_data/indels/.svn/text-base/sample_indels.vcf.svn-base
- sample_data/indels/sample_indels.vcf
- sample_data/loh/.svn/prop-base/sample_loh.spl.svn-base
- sample_data/loh/.svn/text-base/sample_loh.spl.svn-base
- sample_data/loh/sample_loh.spl
- sample_data/trans/.svn/prop-base/sample_trans.spt.svn-base
- sample_data/trans/.svn/text-base/sample_trans.spt.svn-base
- sample_data/trans/sample_trans.spt