NAME

Bio::DB::Persistent::PrimarySeq - Proxy object for database PrimarySeq representations

SYNOPSIS

Give standard usage here

DESCRIPTION

This is a proxy object which will ferry calls to/from database for the heavy stuff (sequence data) while it stores the simple attributes in memory. This object is obtained from a DBAdaptor.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

bioperl-l@bio.perl.org

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web:

bioperl-bugs@bio.perl.org
http://bugzilla.perl.org/

AUTHOR - Hilmar Lapp, Ewan Birney

Email hlapp at gmx.net Based in idea largely on Bio::DB::PrimarySeq by Ewan Birney.

Describe contact details here

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

seq

Title   : seq
Usage   :
Function: Overridden from Bio::PrimarySeq::seq to allow for lazy loading.
Example :
Returns : 
Args    :

subseq

Title   : subseq
Usage   :
Function: Overridden from Bio::PrimarySeq::subseq to allow for intelligent
          database queries or delegation to the sequence object.
Example :
Returns : 
Args    :

seq_has_changed

Title   : seq_has_changed
Usage   : $obj->seq_has_changed($newval)
Function: 
Example : 
Returns : TRUE or FALSE
Args    : new value (TRUE or FALSE, optional)

_seq_is_fetched

Title   : _seq_is_fetched
Usage   : $obj->_seq_is_fetched($newval)
Function: 
Example : 
Returns : TRUE or FALSE
Args    : new value (TRUE or FALSE, optional)