NAME

Bio::DB::BioSQL::mysql::PathAdaptorDriver - DESCRIPTION of Object

SYNOPSIS

Give standard usage here

DESCRIPTION

Describe the object here

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

http://bugzilla.open-bio.org/

AUTHOR - Hilmar Lapp

Email hlapp at gmx.net

CONTRIBUTORS

Additional contributors names and emails here

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

compute_transitive_closure

Title   : compute_transitive_closure
Usage   :
Function: Compute the transitive closure over a given ontology
          and populate the respective path table in the relational
          schema.

Example :
Returns : TRUE on success, and FALSE otherwise
Args    : The calling adaptor.

          The ontology to compute the transitive closure over (a
          persistent Bio::Ontology::OntologyI compliant object).

          The predicate indicating identity between a term and
          itself, to be used as the predicate for the paths of
          distance zero between a term and itself. If undef the zero
          distance paths will not be created.

          A scalar that if evaluating to TRUE means truncate the
          paths for the respective ontology first (optional;
          even though the default is FALSE this parameter should
          usually be given as TRUE unless you know what you are
          doing).