NAME

Bio::Annotation::Target - Provides an object which represents a target (ie, a similarity hit) from one object to something in another database

SYNOPSIS

$target1 = new Bio::Annotation::Target(-target_id  => 'F321966.1',
                                       -start      => 1,
                                       -end        => 200,
                                       -strand     => 1,   # or -1
                                      );

# or

$target2 = new Bio::Annotation::Target();
$target2->target_id('Q75IM5');
$target2->start(7);
# ... etc ...

# Target is-a Bio::AnnotationI object, can be added to annotation
# collections, e.g. the one on features or seqs
$feat->annotation->add_Annotation('Target', $target2);

DESCRIPTION

Provides an object which represents a target (ie, a similarity hit) from one object to something in another database without prescribing what is in the other database

AUTHOR - Scott Cain

Scott Cain - cain@cshl.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

AnnotationI implementing functions

as_text

Title   : as_text
Usage   :
Function:
Example :
Returns :
Args    :

tagname

Title   : tagname
Usage   : $obj->tagname($newval)
Function: Get/set the tagname for this annotation value.

          Setting this is optional. If set, it obviates the need to
          provide a tag to Bio::AnnotationCollectionI when adding
          this object. When obtaining an AnnotationI object from the
          collection, the collection will set the value to the tag
          under which it was stored unless the object has a tag
          stored already.

Example :
Returns : value of tagname (a scalar)
Args    : new value (a scalar, optional)

Specific accessors for Targets

target_id

Usage

$obj->target_id()        #get existing value
$obj->target_id($newval) #set new value

Function

Returns

value of target_id (a scalar)

Arguments

new value of target_id (to set)