NAME
Bio::Phylo::Unparsers::Nexus - Serializer used by Bio::Phylo::IO, no serviceable parts inside
DESCRIPTION
This module turns a Bio::Phylo::Matrices::Matrix object into a nexus formatted matrix. It is called by the Bio::Phylo::IO facade, don't call it directly. You can pass the following additional arguments to the unparse call:
# an array reference of matrix, forest and taxa objects:
-phylo => [ $block1, $block2 ]
# the arguments that can be passed for matrix objects,
# refer to Bio::Phylo::Matrices::Matrix::to_nexus:
-matrix_args => {}
# the arguments that can be passed for forest objects,
# refer to Bio::Phylo::Forest::to_nexus:
-forest_args => {}
# the arguments that can be passed for taxa objects,
# refer to Bio::Phylo::Taxa::to_nexus:
-taxa_args => {}
OR:
# for backward compatibility:
-phylo => $matrix SEE ALSO
- Bio::Phylo::IO
-
The nexus serializer is called by the Bio::Phylo::IO object.
- Bio::Phylo::Manual
-
Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com.
CITATION
If you use Bio::Phylo in published research, please cite it:
Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63
REVISION
$Id: Nexus.pm 1660 2011-04-02 18:29:40Z rvos $