NAME

Bio::Phylo::PhyloWS::Service::Timetree - PhyloWS service wrapper for Timetree

SYNOPSIS

# inside a CGI script:
use CGI;
use Bio::Phylo::PhyloWS::Service::Timetree;

my $cgi = CGI->new;
my $service = Bio::Phylo::PhyloWS::Service::Timetree->new( '-url' => $url );
$service->handle_request($cgi);

DESCRIPTION

This is an example implementation of a PhyloWS service. The service wraps around the timetree web site (using screen scraping) and returns project objects that include a tree for every search result.

METHODS

ACCESSORS

get_query_result()

Gets a phylows cql query result

Type    : Accessor
Title   : get_query_result
Usage   : my $result = $obj->get_query_result( $query );
Function: Gets a query result 
Returns : Bio::Phylo::Project
Args    : Required: $query

get_supported_formats()

Gets an array ref of supported formats

Type    : Accessor
Title   : get_supported_formats
Usage   : my @formats = @{ $obj->get_supported_formats };
Function: Gets an array ref of supported formats
Returns : [ qw(nexml nexus newick html) ]
Args    : NONE

get_redirect()

Gets a redirect URL if relevant

Type    : Accessor
Title   : get_redirect
Usage   : my $url = $obj->get_redirect;
Function: Gets a redirect URL if relevant
Returns : String
Args    : $cgi
Comments: This method is called by handle_request so that
          services can 303 redirect a record lookup to 
          another URL. By default, this method returns 
          undef (i.e. no redirect), but if this implementation
          is called to handle a request that specifies 
          'format=html' the request is forwarded to the
          appropriate page on the http://timetree.org website

SEE ALSO

Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com

CITATION

If you use Bio::Phylo in published research, please cite it:

Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63

REVISION

$Id: Timetree.pm 1660 2011-04-02 18:29:40Z rvos $