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Proch-N50-1.4.7
River stage zero No dependents

Changes for version 1.4.7 - 2022-06-22

  • Preparing for 5.32 (unescaped braces will be fatal in regexes)
  • Documentation fixes
    • Updated Windows tests

Documentation

fu-cat
Concatenate FASTA or FASTQ files
fu-compare
Find the common sequences between two files
fu-count
A FASTA/FASTQ sequence counter
fu-extract
Filter DNA sequences by pattern and/or length
fu-grep
Extract sequences using patterns
fu-hash
Print sequence hashes
fu-len
A demo implementation to filter fastx files by length
fu-rename
rename sequences
fu-sort
Sort sequences by size
fu-uniq
Dereplicate sequences
n50
A script to calculate N50 from one or multiple FASTA/FASTQ files.

Modules

Proch::N50
a small module to calculate N50 (total size, and total number of sequences) for a FASTA or FASTQ file. It's easy to install, with minimal dependencies.
Proch::Seqfu

Other files