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FASTX-Reader-1.9.0
River stage one • 1 direct dependent • 1 total dependent

Changes for version 1.9.0 - 2023-01-12

  • Added `slice(from, len)` method to FASTX::Seq (works as substr)
  • Added `string()` method to get the sequence as a string (FASTQ or FASTA according to the record), with `as_string()` as alias
  • Added `is_fasta()` and `is_fastq()` methods to FASTX::Seq
  • Added `as_fasta()` and `as_fastq()` aliases to FASTX::Seq (for syntax consistency)

Documentation

fqc
A FASTA/FASTQ sequence counter
fqlen.pl
A demo implementation to filter fastx files by length

Modules

FASTX::Reader
A simple module to parse FASTA and FASTQ files, supporting compressed files and paired-ends.
FASTX::ReaderPaired
Warning, Experimental Paired-End FASTQ files reader, based on FASTX::Reader.
FASTX::ScriptHelper
Shared routines for binaries using FASTX::Reader and FASTX::PE.
FASTX::Seq
A class for representing a sequence for FASTX::Reader

Other files