NAME
Bio::GeneDesign::RestrictionEnzymes
VERSION
Version 5.51
DESCRIPTION
GeneDesign functions for handling restriction enzymes
AUTHOR
Sarah Richardson <SMRichardson@lbl.gov>
define_sites()
Generates a hash reference where the keys are enzyme names and the values are Bio::GeneDesign::RestrictionEnzyme objects.
define_site_status
Generates a hash describing the restriction count of a nucleotide sequence.
Arguments: nucleotide sequence as a string
an arrayref of L<Bio::GeneDesign::RestrictionEnzyme> objects
Returns: reference to a hash where the keys are enzyme ids and the value is
a count of their occurence in the nucleotide sequence
_parse_enzyme_list
COPYRIGHT AND LICENSE
Copyright (c) 2013, GeneDesign developers All rights reserved.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
* The names of Johns Hopkins, the Joint Genome Institute, the Lawrence Berkeley National Laboratory, the Department of Energy, and the GeneDesign developers may not be used to endorse or promote products derived from this software without specific prior written permission.
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