NAME

bed2nt2aa.pl - Get nucleotde and amino acid sequences from BED intervals

SYNOPSIS

bed2nt2aa.pl [--bed FILE] [--fa FILE] [--aa] [options]

Provide sequence information for BED intervals/files, optionally translate nucleotide into amino acid sequences.

--bed: Input file in BED6 format (mandatory)
--fa: Input file in Fasta format (mandatory)
--aa: Translate nucleotide into amino acid sequences, providing all three possible frames
--help -h: Print short help
--man: Prints the manual page and exits

Michael T. Wolfinger <michael@wolfinger.eu>

To install Bio::ViennaNGS, copy and paste the appropriate command in to your terminal.

cpanm Bio::ViennaNGS

perl -MCPAN -e shell
install Bio::ViennaNGS

For more information on module installation, please visit the detailed CPAN module installation guide.

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