NAME

bam_uniq.pl - Deconvolute BAM files into unique and multi mappers

SYNOPSIS

bam_uniq.pl [-bam FILE] [-o DIR] [options]

DESCRIPTION

This program extracts uniquely and multiply mapping reads from BAM files acoording to the NH:i SAM attribute and creates separate BAM files for unique and multi mappers, respectively.

OPTIONS

--bam: BAM file to extract unique and multi mappers from
-o: Output path
--help -h: Print short help
--man: Prints the manual page and exits

AUTHOR

Michael T. Wolfinger <michael@wolfinger.eu>

To install Bio::ViennaNGS, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Bio::ViennaNGS

CPAN shell

perl -MCPAN -e shell
install Bio::ViennaNGS

For more information on module installation, please visit the detailed CPAN module installation guide.

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NAME

SYNOPSIS

DESCRIPTION

OPTIONS

AUTHOR

Module Install Instructions