NAME

trim_fastq.pl - Trims sequence and quality string of fastq files on the fly

SYNOPSIS

trim_fastq.pl [-f FILE] [-u INTEGER] [-d INTEGER] [options]

DESCRIPTION

This program trims the sequence and qualitystring fields from a fastq file by user defined length, for example to allow re-mapping if mapping quality is not sufficient without trimming.

OPTIONS

-f: Fastq file for trimming
-u: Number of nucleotides to trim from read/qualitystring start
-d: Number of nucleotides to trim from read/qualitystring end
--help -h: Print short help
--man: Prints the manual page and exits

AUTHOR

Joerg Fallmann <joerg.fallmann@univie.ac.at>

To install Bio::ViennaNGS, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Bio::ViennaNGS

CPAN shell

perl -MCPAN -e shell
install Bio::ViennaNGS

For more information on module installation, please visit the detailed CPAN module installation guide.

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NAME

SYNOPSIS

DESCRIPTION

OPTIONS

AUTHOR

Module Install Instructions