NAME

kmer_analysis.pl - Simple k-mer count analysis of fasta or fastq files

SYNOPSIS

kmer_analysis.pl [-f FILE] [-d STRING] [-o STRING] [-k INTEGER] [-t STRING] [options]

DESCRIPTION

This program counts k-mers of user defined length in fasta or fastq files.

OPTIONS

-f

File for processing

-d

Working directory

-o

Output directory

-k

Kmer length to search

-t

File type, can either be fasta or fastq

--help -h

Print short help

--man

Prints the manual page and exits

AUTHOR

Joerg Fallmann <joerg.fallmann@univie.ac.at>