NAME
draw_bgc_maps.pl - This script draws NRPS/PKS BGC clusters maps in PNG
VERSION
version 0.192560
NAME
draw_bgc_maps.pl - This tool draws NRPS/PKS gene clusters in PNG format. Four modes are allowed: antiSMASH, Palantir, Palantir'exploratory mode, or all.
USAGE
$0 [options] --report-file [=] <infile>REQUIRED ARGUMENTS
- --report[-file] [=] <infile>
-
Path to the output file of antismash, which can be either a biosynML.xml (antiSMASH 3-4) or a regions.js file (antiSMASH 5).
OPTIONAL ARGUMENTS
- --mode [=] <str>
-
Mode from which drawings must be made: antismash (untreated antiSMASH data), palantir (extended domain coordinates + potentially new detected domains), exploratory (noisy overview of all domain protein signatures found without a consensus architecture) [default: all].
- --label [=] <str>
-
Label to use for the mapping of domains: symbol, function, subtype [default: symbol].
- --verbose
-
Print additionnal information concerning domains (functions, coordinates and sequence).
- --outdir [=] <dir_path>
-
Output directory name and path [default: ./png/].
- --prefix [=] <str>
-
String to use for prefixing the PNG files in output [default: none].
- --version
- --usage
- --help
- --man
-
print the usual program information
AUTHOR
Loic MEUNIER <lmeunier@uliege.be>
CONTRIBUTOR
Denis BAURAIN <denis.baurain@uliege.be>
COPYRIGHT AND LICENSE
This software is copyright (c) 2019 by University of Liege / Unit of Eukaryotic Phylogenomics / Loic MEUNIER and Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.