NAME

generate_bgc_report.pl - This script generates customizable PDF reports of antiSMASH results (i.e., gene cluster filter)

VERSION

version 0.191620

NAME

generate_bgc_report.pl - Parses and filters biosynthetic gene cluster information from antiSMASH analyses and report these in PDF or docx reports

VERSION

This documentation refers to antismash-parser version 0.0.1

USAGE

$0 [options] --path <biosynml_path> --taxdir <dir>

REQUIRED ARGUMENTS

--report[-file] [=] <infile>

Path to the output file of antismash, which can be either the biosynML.xml file (antiSMASH 3-4) or the regions.js (antiSMASH 5).

OPTIONS

--filetype <str>

Your report can be either in PDF or docx format. Choose pdf or docx [default: pdf].

--out <str>

Output filename. [default: bgc_report]

--type <str> ...

Filter the report for only a selection of biosynthetic gene cluster types. [default: none]

--version

--usage

--help

--man

print the usual program information

AUTHOR

Loic MEUNIER <lmeunier@uliege.be>

CONTRIBUTOR

Denis BAURAIN <denis.baurain@uliege.be>

COPYRIGHT AND LICENSE

This software is copyright (c) 2019 by University of Liege / Unit of Eukaryotic Phylogenomics / Loic MEUNIER and Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.