Bio-Grep-v0.8.5

Changes for version 0.8.5 - 2007-07-06

POD improvements
Bugfixes:
- SYNOPSIS test failed when Vmatch binary not in path. Closes ticket #28656 (thanks Malcolm)
- arrays not possible with SearchSettings->set (and therefore also not in $sbe->search)

Bio::Grep Cookbook

Wrapper for several suffix array tools

Perl extension for searching in Fasta files

Agrep back-end

Superclass for all back-ends

GUUGle back-end

HyPa back-end

Perl Regular Expression back-end

Vmatch back-end

Superclass for all filter modules

Example Filter

Superclass for all Bio::Grep* packages

Data structure for a back-end search hit

Data structure for all search settings

To install Bio::Grep, copy and paste the appropriate command in to your terminal.

cpanm Bio::Grep

perl -MCPAN -e shell
install Bio::Grep

For more information on module installation, please visit the detailed CPAN module installation guide.

	Global
`s`	Focus search bar
`?`	Bring up this help dialog

	GitHub
`g` `p`	Go to pull requests
`g` `i`	go to github issues (only if github is preferred repository)

	Search terms
module: (e.g. module:Plugin)
distribution: (e.g. distribution:Dancer auth)
author: (e.g. author:SONGMU Redis)
version: (e.g. version:1.00)