Changes for version 0.8.0 - 2007-07-30
- POD improvements
- direct_and_rev_com
- RE back-end
- use Fatal qw(open close), removed own exception handling
- replaced global dirhandle in BackendI with local dirhandle
- more tests
- renamed generate_database_out_of_fastafile() to generate_database()
- renamed Backends/ to Backend
- Bugfixes:
- GUUGle back-end confused when sequence description missing
Documentation
Wrapper for several suffix array tools
Modules
Perl extension for searching in Fasta files
Agrep back-end
Superclass for all back-ends
GUUGle back-end
HyPa back-end
Perl Regular Expression back-end
Vmatch back-end
Data structure for a back-end search hit
Data structure for all search settings
Superclass for all filter modules
Example Filter
Superclass for all Bio::Grep* packages