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Bio-Grep-v0.6.0
River stage zero No dependents

Changes for version 0.6.0 - 2007-03-27

  • POD improvements
  • BackendI code cleanups
  • renamed feature QUERYFILE to QUERY_FILE
  • did not throw an exception when query and query_file are set
  • more tests
  • removed $res->get_gene_id and $res->alignment_to_csv

Documentation

bgrep
Wrapper for several suffix array tools

Modules

Bio::Grep
Perl extension for searching in Fasta files
Bio::Grep::Backends::Agrep
Agrep back-end
Bio::Grep::Backends::BackendI
Superclass for all back-ends
Bio::Grep::Backends::GUUGle
GUUGle back-end
Bio::Grep::Backends::Hypa
HyPa back-end
Bio::Grep::Backends::Vmatch
Vmatch back-end
Bio::Grep::Container::SearchResult
Data structure for a back-end search hit
Bio::Grep::Container::SearchSettings
Data structure for all search settings
Bio::Grep::Filter::FilterI
Superclass for all filter modules
Bio::Grep::Filter::FilterRemoveDuplicates
Example Filter
Bio::Grep::Root
Superclass for all Bio::Grep* packages

Other files