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Bio-Grep-0.10.5
River stage zero No dependents

Changes for version 0.10.5 - 2008-07-26

  • META.yml broken
  • small cleanup in Vmatch back-end
  • RE backend: switched to $+ and $- to retrieve the positions.

Documentation

Bio::Grep::Benchmarks
Bio::Grep Benchmarks
Bio::Grep::Cookbook
Bio::Grep Cookbook

Modules

Bio::Grep
Perl extension for searching in DNA and Protein sequences
Bio::Grep::Backend::Agrep
Agrep back-end
Bio::Grep::Backend::BackendI
Superclass for all back-ends
Bio::Grep::Backend::GUUGle
GUUGle back-end
Bio::Grep::Backend::RE
Perl Regular Expression back-end
Bio::Grep::Backend::Vmatch
Vmatch back-end
Bio::Grep::Filter::FilterI
Superclass for all filter modules
Bio::Grep::Filter::FilterRemoveDuplicates
Example Filter
Bio::Grep::Root
Superclass for all Bio::Grep* packages
Bio::Grep::SearchResult
Data structure for a back-end search hit
Bio::Grep::SearchSettings
Data structure for all search settings

Examples

Other files