Changes for version 1.0.2 - 2016-06-17
- Added fix for arrays or hashes in workflow config
- Added documentation for select_rules and match_rules
- Refactored code into Moose roles
- Added getopt option for plugins
Documentation
Modules
A very opinionated template based workflow writer.
Provides
in lib/BioX/Workflow/Debug.pm
in lib/BioX/Workflow/Rules.pm
in lib/BioX/Workflow/Samples.pm
in lib/BioX/Workflow/SpecialVars.pm
in lib/BioX/Workflow/StructureOutput.pm
in lib/BioX/Workflow/WriteMeta.pm
Examples
- example/bootstrap-example.sh
- example/example1/config.yml
- example/example1/data/raw/SAMPLE1.csv
- example/example1/data/raw/SAMPLE2.csv
- example/example1/workflow.sh
- example/example2/data/raw/SAMPLE1.vcf
- example/example2/data/raw/SAMPLE2.vcf.gz
- example/example2/data/raw/SAMPLE3.vcf.gz
- example/example2/gemini.yml
- example/example2/workflow.sh
- example/example3/data/raw/SAMPLE1.csv
- example/example3/data/raw/SAMPLE2.csv
- example/example3/drake.full.png
- example/example3/drake.full.yml
- example/example3/drake.log
- example/example3/drake.min.png
- example/example3/drake.min.yml
- example/example3/drake.yml
- example/example3/run-workflow.sh
- example/example3/workflow.full.drake
- example/example3/workflow.min.drake
- example/example4/data/raw/SAMPLE1.csv
- example/example4/data/raw/SAMPLE1/SAMPLE1.csv
- example/example4/data/raw/SAMPLE2.csv
- example/example4/data/raw/SAMPLE2/SAMPLE2.csv
- example/example4/workflow.yml
