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Bio-MAGE-20020902.6
River stage zero No dependents

Modules

Bio::MAGE
Container module for classes in the MAGE MAGE package
Bio::MAGE::Array
Container module for classes in the MAGE Array package
Bio::MAGE::ArrayDesign
Container module for classes in the MAGE ArrayDesign package
Bio::MAGE::AuditAndSecurity
Container module for classes in the MAGE AuditAndSecurity package
Bio::MAGE::BQS
Container module for classes in the MAGE BQS package
Bio::MAGE::BioAssay
Container module for classes in the MAGE BioAssay package
Bio::MAGE::BioAssayData
Container module for classes in the MAGE BioAssayData package
Bio::MAGE::BioEvent
Container module for classes in the MAGE BioEvent package
Bio::MAGE::BioMaterial
Container module for classes in the MAGE BioMaterial package
Bio::MAGE::BioSequence
Container module for classes in the MAGE BioSequence package
Bio::MAGE::Description
Container module for classes in the MAGE Description package
Bio::MAGE::DesignElement
Container module for classes in the MAGE DesignElement package
Bio::MAGE::Experiment
Container module for classes in the MAGE Experiment package
Bio::MAGE::HigherLevelAnalysis
Container module for classes in the MAGE HigherLevelAnalysis package
Bio::MAGE::Measurement
Container module for classes in the MAGE Measurement package
Bio::MAGE::Protocol
Container module for classes in the MAGE Protocol package
Bio::MAGE::QuantitationType
Container module for classes in the MAGE QuantitationType package
Bio::MAGE::SQLWriter
a module for exporting MAGE-OM objects to a database
Bio::MAGE::XML::Handler::ObjectHandler::SQL
DESCRIPTION of Object
Bio::MAGE::XML::Handler::ObjectHandlerI
Abstract class for processing Bio::MAGE objects.
Bio::MAGE::XML::Reader
a module for exporting MAGE-ML
Bio::MAGE::XML::Writer
a module for exporting MAGE-ML

Provides

Bio::MAGE::Array::Array
in MAGE/Array/Array.pm
Bio::MAGE::Array::ArrayGroup
in MAGE/Array/ArrayGroup.pm
Bio::MAGE::Array::ArrayManufacture
in MAGE/Array/ArrayManufacture.pm
Bio::MAGE::Array::ArrayManufactureDeviation
in MAGE/Array/ArrayManufactureDeviation.pm
Bio::MAGE::Array::FeatureDefect
in MAGE/Array/FeatureDefect.pm
Bio::MAGE::Array::Fiducial
in MAGE/Array/Fiducial.pm
Bio::MAGE::Array::ManufactureLIMS
in MAGE/Array/ManufactureLIMS.pm
Bio::MAGE::Array::ManufactureLIMSBiomaterial
in MAGE/Array/ManufactureLIMSBiomaterial.pm
Bio::MAGE::Array::PositionDelta
in MAGE/Array/PositionDelta.pm
Bio::MAGE::Array::ZoneDefect
in MAGE/Array/ZoneDefect.pm
Bio::MAGE::ArrayDesign::ArrayDesign
in MAGE/ArrayDesign/ArrayDesign.pm
Bio::MAGE::ArrayDesign::CompositeGroup
in MAGE/ArrayDesign/CompositeGroup.pm
Bio::MAGE::ArrayDesign::DesignElementGroup
in MAGE/ArrayDesign/DesignElementGroup.pm
Bio::MAGE::ArrayDesign::FeatureGroup
in MAGE/ArrayDesign/FeatureGroup.pm
Bio::MAGE::ArrayDesign::PhysicalArrayDesign
in MAGE/ArrayDesign/PhysicalArrayDesign.pm
Bio::MAGE::ArrayDesign::ReporterGroup
in MAGE/ArrayDesign/ReporterGroup.pm
Bio::MAGE::ArrayDesign::Zone
in MAGE/ArrayDesign/Zone.pm
Bio::MAGE::ArrayDesign::ZoneGroup
in MAGE/ArrayDesign/ZoneGroup.pm
Bio::MAGE::ArrayDesign::ZoneLayout
in MAGE/ArrayDesign/ZoneLayout.pm
Bio::MAGE::Association
in MAGE/Association.pm
Bio::MAGE::Association::End
in MAGE/Association.pm
Bio::MAGE::AuditAndSecurity::Audit
in MAGE/AuditAndSecurity/Audit.pm
Bio::MAGE::AuditAndSecurity::Contact
in MAGE/AuditAndSecurity/Contact.pm
Bio::MAGE::AuditAndSecurity::Organization
in MAGE/AuditAndSecurity/Organization.pm
Bio::MAGE::AuditAndSecurity::Person
in MAGE/AuditAndSecurity/Person.pm
Bio::MAGE::AuditAndSecurity::Security
in MAGE/AuditAndSecurity/Security.pm
Bio::MAGE::AuditAndSecurity::SecurityGroup
in MAGE/AuditAndSecurity/SecurityGroup.pm
Bio::MAGE::BQS::BibliographicReference
in MAGE/BQS/BibliographicReference.pm
Bio::MAGE::Base
in MAGE/Base.pm
Bio::MAGE::BioAssay::BioAssay
in MAGE/BioAssay/BioAssay.pm
Bio::MAGE::BioAssay::BioAssayCreation
in MAGE/BioAssay/BioAssayCreation.pm
Bio::MAGE::BioAssay::BioAssayTreatment
in MAGE/BioAssay/BioAssayTreatment.pm
Bio::MAGE::BioAssay::Channel
in MAGE/BioAssay/Channel.pm
Bio::MAGE::BioAssay::DerivedBioAssay
in MAGE/BioAssay/DerivedBioAssay.pm
Bio::MAGE::BioAssay::FeatureExtraction
in MAGE/BioAssay/FeatureExtraction.pm
Bio::MAGE::BioAssay::Hybridization
in MAGE/BioAssay/Hybridization.pm
Bio::MAGE::BioAssay::Image
in MAGE/BioAssay/Image.pm
Bio::MAGE::BioAssay::ImageAcquisition
in MAGE/BioAssay/ImageAcquisition.pm
Bio::MAGE::BioAssay::MeasuredBioAssay
in MAGE/BioAssay/MeasuredBioAssay.pm
Bio::MAGE::BioAssay::PhysicalBioAssay
in MAGE/BioAssay/PhysicalBioAssay.pm
Bio::MAGE::BioAssayData::BioAssayData
in MAGE/BioAssayData/BioAssayData.pm
Bio::MAGE::BioAssayData::BioAssayDatum
in MAGE/BioAssayData/BioAssayDatum.pm
Bio::MAGE::BioAssayData::BioAssayDimension
in MAGE/BioAssayData/BioAssayDimension.pm
Bio::MAGE::BioAssayData::BioAssayMap
in MAGE/BioAssayData/BioAssayMap.pm
Bio::MAGE::BioAssayData::BioAssayMapping
in MAGE/BioAssayData/BioAssayMapping.pm
Bio::MAGE::BioAssayData::BioDataCube
in MAGE/BioAssayData/BioDataCube.pm
Bio::MAGE::BioAssayData::BioDataTuples
in MAGE/BioAssayData/BioDataTuples.pm
Bio::MAGE::BioAssayData::BioDataValues
in MAGE/BioAssayData/BioDataValues.pm
Bio::MAGE::BioAssayData::CompositeSequenceDimension
in MAGE/BioAssayData/CompositeSequenceDimension.pm
Bio::MAGE::BioAssayData::DerivedBioAssayData
in MAGE/BioAssayData/DerivedBioAssayData.pm
Bio::MAGE::BioAssayData::DesignElementDimension
in MAGE/BioAssayData/DesignElementDimension.pm
Bio::MAGE::BioAssayData::DesignElementMap
in MAGE/BioAssayData/DesignElementMap.pm
Bio::MAGE::BioAssayData::DesignElementMapping
in MAGE/BioAssayData/DesignElementMapping.pm
Bio::MAGE::BioAssayData::FeatureDimension
in MAGE/BioAssayData/FeatureDimension.pm
Bio::MAGE::BioAssayData::MeasuredBioAssayData
in MAGE/BioAssayData/MeasuredBioAssayData.pm
Bio::MAGE::BioAssayData::QuantitationTypeDimension
in MAGE/BioAssayData/QuantitationTypeDimension.pm
Bio::MAGE::BioAssayData::QuantitationTypeMap
in MAGE/BioAssayData/QuantitationTypeMap.pm
Bio::MAGE::BioAssayData::QuantitationTypeMapping
in MAGE/BioAssayData/QuantitationTypeMapping.pm
Bio::MAGE::BioAssayData::ReporterDimension
in MAGE/BioAssayData/ReporterDimension.pm
Bio::MAGE::BioAssayData::Transformation
in MAGE/BioAssayData/Transformation.pm
Bio::MAGE::BioEvent::BioEvent
in MAGE/BioEvent/BioEvent.pm
Bio::MAGE::BioEvent::Map
in MAGE/BioEvent/Map.pm
Bio::MAGE::BioMaterial::BioMaterial
in MAGE/BioMaterial/BioMaterial.pm
Bio::MAGE::BioMaterial::BioMaterialMeasurement
in MAGE/BioMaterial/BioMaterialMeasurement.pm
Bio::MAGE::BioMaterial::BioSample
in MAGE/BioMaterial/BioSample.pm
Bio::MAGE::BioMaterial::BioSource
in MAGE/BioMaterial/BioSource.pm
Bio::MAGE::BioMaterial::Compound
in MAGE/BioMaterial/Compound.pm
Bio::MAGE::BioMaterial::CompoundMeasurement
in MAGE/BioMaterial/CompoundMeasurement.pm
Bio::MAGE::BioMaterial::LabeledExtract
in MAGE/BioMaterial/LabeledExtract.pm
Bio::MAGE::BioMaterial::Treatment
in MAGE/BioMaterial/Treatment.pm
Bio::MAGE::BioSequence::BioSequence
in MAGE/BioSequence/BioSequence.pm
Bio::MAGE::BioSequence::SeqFeature
in MAGE/BioSequence/SeqFeature.pm
Bio::MAGE::BioSequence::SeqFeatureLocation
in MAGE/BioSequence/SeqFeatureLocation.pm
Bio::MAGE::BioSequence::SequencePosition
in MAGE/BioSequence/SequencePosition.pm
Bio::MAGE::Describable
in MAGE/Describable.pm
Bio::MAGE::Description::Database
in MAGE/Description/Database.pm
Bio::MAGE::Description::DatabaseEntry
in MAGE/Description/DatabaseEntry.pm
Bio::MAGE::Description::Description
in MAGE/Description/Description.pm
Bio::MAGE::Description::ExternalReference
in MAGE/Description/ExternalReference.pm
Bio::MAGE::Description::OntologyEntry
in MAGE/Description/OntologyEntry.pm
Bio::MAGE::DesignElement::CompositeCompositeMap
in MAGE/DesignElement/CompositeCompositeMap.pm
Bio::MAGE::DesignElement::CompositePosition
in MAGE/DesignElement/CompositePosition.pm
Bio::MAGE::DesignElement::CompositeSequence
in MAGE/DesignElement/CompositeSequence.pm
Bio::MAGE::DesignElement::DesignElement
in MAGE/DesignElement/DesignElement.pm
Bio::MAGE::DesignElement::Feature
in MAGE/DesignElement/Feature.pm
Bio::MAGE::DesignElement::FeatureInformation
in MAGE/DesignElement/FeatureInformation.pm
Bio::MAGE::DesignElement::FeatureLocation
in MAGE/DesignElement/FeatureLocation.pm
Bio::MAGE::DesignElement::FeatureReporterMap
in MAGE/DesignElement/FeatureReporterMap.pm
Bio::MAGE::DesignElement::MismatchInformation
in MAGE/DesignElement/MismatchInformation.pm
Bio::MAGE::DesignElement::Position
in MAGE/DesignElement/Position.pm
Bio::MAGE::DesignElement::Reporter
in MAGE/DesignElement/Reporter.pm
Bio::MAGE::DesignElement::ReporterCompositeMap
in MAGE/DesignElement/ReporterCompositeMap.pm
Bio::MAGE::DesignElement::ReporterPosition
in MAGE/DesignElement/ReporterPosition.pm
Bio::MAGE::DocumentHandler
in MAGE/XML/Handler/DocumentHandler.pm
Bio::MAGE::Experiment::Experiment
in MAGE/Experiment/Experiment.pm
Bio::MAGE::Experiment::ExperimentDesign
in MAGE/Experiment/ExperimentDesign.pm
Bio::MAGE::Experiment::ExperimentalFactor
in MAGE/Experiment/ExperimentalFactor.pm
Bio::MAGE::Experiment::FactorValue
in MAGE/Experiment/FactorValue.pm
Bio::MAGE::Extendable
in MAGE/Extendable.pm
Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster
in MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm
Bio::MAGE::HigherLevelAnalysis::Node
in MAGE/HigherLevelAnalysis/Node.pm
Bio::MAGE::HigherLevelAnalysis::NodeContents
in MAGE/HigherLevelAnalysis/NodeContents.pm
Bio::MAGE::HigherLevelAnalysis::NodeValue
in MAGE/HigherLevelAnalysis/NodeValue.pm
Bio::MAGE::Identifiable
in MAGE/Identifiable.pm
Bio::MAGE::Measurement::ConcentrationUnit
in MAGE/Measurement/ConcentrationUnit.pm
Bio::MAGE::Measurement::DistanceUnit
in MAGE/Measurement/DistanceUnit.pm
Bio::MAGE::Measurement::MassUnit
in MAGE/Measurement/MassUnit.pm
Bio::MAGE::Measurement::Measurement
in MAGE/Measurement/Measurement.pm
Bio::MAGE::Measurement::QuantityUnit
in MAGE/Measurement/QuantityUnit.pm
Bio::MAGE::Measurement::TemperatureUnit
in MAGE/Measurement/TemperatureUnit.pm
Bio::MAGE::Measurement::TimeUnit
in MAGE/Measurement/TimeUnit.pm
Bio::MAGE::Measurement::Unit
in MAGE/Measurement/Unit.pm
Bio::MAGE::Measurement::VolumeUnit
in MAGE/Measurement/VolumeUnit.pm
Bio::MAGE::NameValueType
in MAGE/NameValueType.pm
Bio::MAGE::Protocol::Hardware
in MAGE/Protocol/Hardware.pm
Bio::MAGE::Protocol::HardwareApplication
in MAGE/Protocol/HardwareApplication.pm
Bio::MAGE::Protocol::Parameter
in MAGE/Protocol/Parameter.pm
Bio::MAGE::Protocol::ParameterValue
in MAGE/Protocol/ParameterValue.pm
Bio::MAGE::Protocol::Parameterizable
in MAGE/Protocol/Parameterizable.pm
Bio::MAGE::Protocol::ParameterizableApplication
in MAGE/Protocol/ParameterizableApplication.pm
Bio::MAGE::Protocol::Protocol
in MAGE/Protocol/Protocol.pm
Bio::MAGE::Protocol::ProtocolApplication
in MAGE/Protocol/ProtocolApplication.pm
Bio::MAGE::Protocol::Software
in MAGE/Protocol/Software.pm
Bio::MAGE::Protocol::SoftwareApplication
in MAGE/Protocol/SoftwareApplication.pm
Bio::MAGE::QuantitationType::ConfidenceIndicator
in MAGE/QuantitationType/ConfidenceIndicator.pm
Bio::MAGE::QuantitationType::DerivedSignal
in MAGE/QuantitationType/DerivedSignal.pm
Bio::MAGE::QuantitationType::Error
in MAGE/QuantitationType/Error.pm
Bio::MAGE::QuantitationType::ExpectedValue
in MAGE/QuantitationType/ExpectedValue.pm
Bio::MAGE::QuantitationType::Failed
in MAGE/QuantitationType/Failed.pm
Bio::MAGE::QuantitationType::MeasuredSignal
in MAGE/QuantitationType/MeasuredSignal.pm
Bio::MAGE::QuantitationType::PValue
in MAGE/QuantitationType/PValue.pm
Bio::MAGE::QuantitationType::PresentAbsent
in MAGE/QuantitationType/PresentAbsent.pm
Bio::MAGE::QuantitationType::QuantitationType
in MAGE/QuantitationType/QuantitationType.pm
Bio::MAGE::QuantitationType::Ratio
in MAGE/QuantitationType/Ratio.pm
Bio::MAGE::QuantitationType::SpecializedQuantitationType
in MAGE/QuantitationType/SpecializedQuantitationType.pm
Bio::MAGE::QuantitationType::StandardQuantitationType
in MAGE/QuantitationType/StandardQuantitationType.pm
Bio::MAGE::XML::Handler
in MAGE/XML/Handler.pm
Bio::MAGE::XML::Handler::ContentHandler
in MAGE/XML/Handler/ContentHandler.pm
Bio::MAGE::XMLUtils
in MAGE/XMLUtils.pm

Other files