NAME

fastQ_brew_Conversions - file reformatting for fastQ_brew

SYNOPSIS

use Moose;
use Modern::Perl;
use base 'Exporter';

DESCRIPTION

This package provides subroutines for file conversion

Support

All contributions are welcome

Reporting Bugs

Report bugs to the fastQ_brew bug tracking system to help keep track of the bugs and their resolution. Bug reports can be submitted via the web: https://github.com/dohalloran/fastQ_brew/issues

APPENDIX

The rest of the documentation details each of the object methods.

_convert_fasta()

Title   : _convert_fasta()
Usage   : _convert_fasta(%arg);
Function: option to convert fastQ file to fastA
Returns : fastA file
Args    : %arg

_reverse_comp()

Title   : _reverse_comp()
Usage   : $self->_reverse_comp(%arg)
Function: option to rev comp fastQ reads
Returns : reverse complemented fastQ file
Args    : %arg

_dna_rna()

Title   : _dna_rna()
Usage   : $self->_dna_rna(%arg)
Function: option to convert dna to rna for fastQ reads
Returns : RNA fastQ file
Args    : %arg