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Metabolomics-Fragment-Annotation-0.6.4
River stage zero No dependents

Changes for version 0.6.4 - 2021-08-10

  • POD Update
  • multiAnnotation support in matching algo and writers
  • PeakForest REST API integration (GC/MS)
  • Compute scores for GC/MS
  • supporting CSV and TSV as inputs (sniffer)
  • generate html output format

Documentation

update_resources.pl
Utility to update all databases referenced in metabolomics-references project.

Modules

Metabolomics::Banks
Perl extension to build metabolite banks for metabolomics
Metabolomics::Banks::AbInitioFragments
Perl extension for Ab Initio Fragments generator
Metabolomics::Banks::BloodExposome
Perl extension for BloodExposome bank
Metabolomics::Banks::Knapsack
Perl extension for Knapsack bank
Metabolomics::Banks::MaConDa
Perl extension for contaminants bank building
Metabolomics::Banks::PeakForest
Perl extension for PeakForest bank
Metabolomics::Banks::PhytoHub
Perl extension for PhytoHub bank
PeakForest::REST_Client::ApiFactory
constructs APIs to retrieve PeakForest::REST_Client objects
PeakForest::REST_Client::Configuration
holds the configuration for all PeakForest::REST_Client Modules
PeakForest::REST_Client::Role
a Moose role for the PeakForest REST API
Metabolomics::Formats::W4M
Perl W4M extension of the metabolomics::fragment::annotation module
Metabolomics::Fragment::Annotation
Perl extension for fragment annotation in metabolomics
Metabolomics::Utils
Perl Utils extension metabolomics::fragment::annotation module

Provides

PeakForest::REST_Client::ApiClient
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/ApiClient.pm
PeakForest::REST_Client::ChromatographyApi
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/ChromatographyApi.pm
PeakForest::REST_Client::CompoundsApi
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/CompoundsApi.pm
PeakForest::REST_Client::InformationsApi
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/InformationsApi.pm
PeakForest::REST_Client::Object::Chromatography
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Chromatography.pm
PeakForest::REST_Client::Object::Compound
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Compound.pm
PeakForest::REST_Client::Object::FragmentationLcmsSpectrum
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FragmentationLcmsSpectrum.pm
PeakForest::REST_Client::Object::FullscanGcmsSpectrum
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FullscanGcmsSpectrum.pm
PeakForest::REST_Client::Object::FullscanGcmsSpectrumAllOf
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FullscanGcmsSpectrumAllOf.pm
PeakForest::REST_Client::Object::FullscanLcmsSpectrum
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/FullscanLcmsSpectrum.pm
PeakForest::REST_Client::Object::GasChromatography
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/GasChromatography.pm
PeakForest::REST_Client::Object::GasChromatographyAllOf
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/GasChromatographyAllOf.pm
PeakForest::REST_Client::Object::Informations
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Informations.pm
PeakForest::REST_Client::Object::LiquidChromatography
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/LiquidChromatography.pm
PeakForest::REST_Client::Object::LiquidChromatographyAllOf
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/LiquidChromatographyAllOf.pm
PeakForest::REST_Client::Object::MassPeak
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/MassPeak.pm
PeakForest::REST_Client::Object::MassSpectrum
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/MassSpectrum.pm
PeakForest::REST_Client::Object::MassSpectrumAllOf
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/MassSpectrumAllOf.pm
PeakForest::REST_Client::Object::Nmr1dPeak
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dPeak.pm
PeakForest::REST_Client::Object::Nmr1dPeakpattern
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dPeakpattern.pm
PeakForest::REST_Client::Object::Nmr1dSpectrum
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dSpectrum.pm
PeakForest::REST_Client::Object::Nmr1dSpectrumAllOf
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr1dSpectrumAllOf.pm
PeakForest::REST_Client::Object::Nmr2dPeak
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr2dPeak.pm
PeakForest::REST_Client::Object::Nmr2dSpectrum
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr2dSpectrum.pm
PeakForest::REST_Client::Object::Nmr2dSpectrumAllOf
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Nmr2dSpectrumAllOf.pm
PeakForest::REST_Client::Object::NmrSpectrum
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/NmrSpectrum.pm
PeakForest::REST_Client::Object::NmrSpectrumAllOf
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/NmrSpectrumAllOf.pm
PeakForest::REST_Client::Object::Spectrum
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Object/Spectrum.pm
PeakForest::REST_Client::Role::AutoDoc
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/Role/AutoDoc.pm
PeakForest::REST_Client::SpectraApi
in lib/Metabolomics/Banks/lib/PeakForest/REST_Client/SpectraApi.pm

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