Changes for version 1.01 - 2015-04-30
- First version, including methods to calculate codon usage bias indice at both codon and sequence levels.
Documentation
a program to calculate CAI for codons
a program to calculate tAI of each codon
a program to calculate sequence codon usage bias indices and other sequence parameters.
Modules
the root class for the whole distribution of http://search.cpan.org/dist/Bio-CUA/
This is the parent class for all classs processing codon usage bias (CUB).
A module to calculate codon usage bias (CUB) indice for protein-coding sequences
A package processing genetic codon table
a module processing sequence object
a package to parse sequence file if module Bio::SeqIO is unavailable in the system.
a class to summarize features of sequences.