Changes for version 0.32
Documentation
perl modules for CCO and OBO ontologies
Collects the ancestor terms (list of IDs) from a given term (existing ID) in the given OBO ontology.
Gene Ontology (in OBO) to OWL translator.
OBO to OWL translator.
OWL to OBO translator (oboinowl mapping).
Modules
Reference structure.
Definition structure.
a GOA association record.
A mapping between a "local" ID space and a "global" ID space
an ontology holding terms and their relationships
a relationship between two terms or two relationships within an ontology.
a type of relationship type in an ontology
A term synonym.
A synonym type definition. It should contain a synonym type name, a space, a quote enclosed description, and an optional scope specifier.
a universal in an ontology
A GOA associations to OBO translator.
An IntAct to OBO parser/filter.
A NCBI taxonomy to OBO translator.
An OBO (Open Biomedical Ontologies) file parser.
An OWL parser (oboInOwl mapping).
A UniProt to OBO translator.
module for describing Cell Cycle Ontology (CCO) identifiers. Its namespace, subnamespace and number are stored.
class implementing a set of CCO::Util::CCO_ID objects.
a map between CCO IDs and term names.
a DbxrefSet implementation
a GoaAssociationSet implementation
a Set implementation
class implementing a set of ontology objects.
a Set implementation
a Set implementation
a Set implementation
a Set implementation
Provides
in CCO/Core/Interaction.pm
in CCO/Core/Interactor.pm
in CCO/Util/XMLIntactParser.pm