NAME

FAST::Bio::SeqFeature::Gene::UTR - A feature representing an untranslated region that is part of a transcriptional unit

SYNOPSIS

See documentation of methods

DESCRIPTION

A UTR is a FAST::Bio::SeqFeature::Gene::ExonI compliant object that is non-coding, and can be either 5' or 3' in a transcript.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://redmine.open-bio.org/projects/bioperl/

AUTHOR - David Block

Email dblock@gene.pbi.nrc.ca

CONTRIBUTORS

This is based on the Gene Structure scaffolding erected by Hilmar Lapp (hlapp@gmx.net).

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

Title   : new
Usage   :
Function: We override the constructor here to set is_coding to false
          unless explicitly overridden.

Example :
Returns : 
Args    :

primary_tag

Title   : primary_tag
Usage   : $tag = $feat->primary_tag()
Function: Returns the primary tag for a feature,
          eg 'utr5prime'.  This method insures that 5prime/3prime information
          is uniformly stored
Returns : a string 
Args    : none