Bio-ConnectDots-1.0.0

Changes for version 1.00 - 2005-02-03

original version; created by h2xs 1.22 with options -AXcfn Bio::ConnectDots

Modules

Bio::ConnectDots::ConnectDots

Top level class for 'connect-the-dots'

Bio::ConnectDots::Connector

one connection entry for 'connect-the-dots'

Bio::ConnectDots::ConnectorQuery

Bio::ConnectDots::ConnectorSet

'connect-the-dots'

Bio::ConnectDots::DB

Database adapter for 'connect-the-dots'

Bio::ConnectDots::Dot

one dot entry for 'connect-the-dots'

Bio::ConnectDots::SimpleGraph

Bio::DB::GFF::Adaptor::dbi::iterator

iterator for Bio::DB::GFF::Adaptor::dbi

Provides

Bio::ConnectDots::Config

in lib/Bio/ConnectDots/Config.pm

Bio::ConnectDots::ConnectorQuery::Alias

in lib/Bio/ConnectDots/ConnectorQuery/Alias.pm

Bio::ConnectDots::ConnectorQuery::Constraint

in lib/Bio/ConnectDots/ConnectorQuery/Constraint.pm

Bio::ConnectDots::ConnectorQuery::Inner

in lib/Bio/ConnectDots/ConnectorQuery/Inner.pm

Bio::ConnectDots::ConnectorQuery::Join

in lib/Bio/ConnectDots/ConnectorQuery/Join.pm

Bio::ConnectDots::ConnectorQuery::Operator::Constraint

in lib/Bio/ConnectDots/ConnectorQuery/Operator/Constraint.pm

Bio::ConnectDots::ConnectorQuery::Operator::CsConstraint

in lib/Bio/ConnectDots/ConnectorQuery/Operator/CsConstraint.pm

Bio::ConnectDots::ConnectorQuery::Operator::CsCsJoin

in lib/Bio/ConnectDots/ConnectorQuery/Operator/CsCsJoin.pm

Bio::ConnectDots::ConnectorQuery::Operator::CsRootConstraint

in lib/Bio/ConnectDots/ConnectorQuery/Operator/CsRootConstraint.pm

Bio::ConnectDots::ConnectorQuery::Operator::CsSource

in lib/Bio/ConnectDots/ConnectorQuery/Operator/CsSource.pm

Bio::ConnectDots::ConnectorQuery::Operator::CtConstraint

in lib/Bio/ConnectDots/ConnectorQuery/Operator/CtConstraint.pm

Bio::ConnectDots::ConnectorQuery::Operator::CtCsJoin

in lib/Bio/ConnectDots/ConnectorQuery/Operator/CtCsJoin.pm

Bio::ConnectDots::ConnectorQuery::Operator::CtCtJoin

in lib/Bio/ConnectDots/ConnectorQuery/Operator/CtCtJoin.pm

Bio::ConnectDots::ConnectorQuery::Operator::CtSource

in lib/Bio/ConnectDots/ConnectorQuery/Operator/CtSource.pm

Bio::ConnectDots::ConnectorQuery::Operator::Join

in lib/Bio/ConnectDots/ConnectorQuery/Operator/Join.pm

Bio::ConnectDots::ConnectorQuery::Operator::Source

in lib/Bio/ConnectDots/ConnectorQuery/Operator/Source.pm

Bio::ConnectDots::ConnectorQuery::Outer

in lib/Bio/ConnectDots/ConnectorQuery/Outer.pm

Bio::ConnectDots::ConnectorQuery::Term

in lib/Bio/ConnectDots/ConnectorQuery/Term.pm

Bio::ConnectDots::ConnectorSet::DoTS

in lib/Bio/ConnectDots/ConnectorSet/DoTS.pm

Bio::ConnectDots::ConnectorSet::ENZYME

in lib/Bio/ConnectDots/ConnectorSet/ENZYME.pm

Bio::ConnectDots::ConnectorSet::EPconDBhumanchip1

in lib/Bio/ConnectDots/ConnectorSet/EPconDBhumanchip1.pm

Bio::ConnectDots::ConnectorSet::EPconDBmousechip5

in lib/Bio/ConnectDots/ConnectorSet/EPconDBmousechip5.pm

Bio::ConnectDots::ConnectorSet::GOA

in lib/Bio/ConnectDots/ConnectorSet/GOA.pm

Bio::ConnectDots::ConnectorSet::HG_Focus_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/HG_Focus_annot_csv.pm

Bio::ConnectDots::ConnectorSet::HG_U133A_2_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/HG_U133A_2_annot_csv.pm

Bio::ConnectDots::ConnectorSet::HG_U133A_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/HG_U133A_annot_csv.pm

Bio::ConnectDots::ConnectorSet::HG_U133B_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/HG_U133B_annot_csv.pm

Bio::ConnectDots::ConnectorSet::HG_U133_Plus_2_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/HG_U133_Plus_2_annot_csv.pm

Bio::ConnectDots::ConnectorSet::HG_U95Av2_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/HG_U95Av2_annot_csv.pm

Bio::ConnectDots::ConnectorSet::IPI

in lib/Bio/ConnectDots/ConnectorSet/IPI.pm

Bio::ConnectDots::ConnectorSet::LocusLink

in lib/Bio/ConnectDots/ConnectorSet/LocusLink.pm

Bio::ConnectDots::ConnectorSet::MG_U74Av2_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/MG_U74Av2_annot_csv.pm

Bio::ConnectDots::ConnectorSet::MG_U74Bv2_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/MG_U74Bv2_annot_csv.pm

Bio::ConnectDots::ConnectorSet::MG_U74Cv2_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/MG_U74Cv2_annot_csv.pm

Bio::ConnectDots::ConnectorSet::Mouse430A_2_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/Mouse430A_2_annot_csv.pm

Bio::ConnectDots::ConnectorSet::Mouse430_2_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/Mouse430_2_annot_csv.pm

Bio::ConnectDots::ConnectorSet::Mu11KsubA_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/Mu11KsubA_annot_csv.pm

Bio::ConnectDots::ConnectorSet::Mu11KsubB_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/Mu11KsubB_annot_csv.pm

Bio::ConnectDots::ConnectorSet::OMIM

in lib/Bio/ConnectDots/ConnectorSet/OMIM.pm

Bio::ConnectDots::ConnectorSet::RG_U34A_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/RG_U34A_annot_csv.pm

Bio::ConnectDots::ConnectorSet::RG_U34B_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/RG_U34B_annot_csv.pm

Bio::ConnectDots::ConnectorSet::RG_U34C_annot_csv

in lib/Bio/ConnectDots/ConnectorSet/RG_U34C_annot_csv.pm

Bio::ConnectDots::ConnectorSet::RefGene

in lib/Bio/ConnectDots/ConnectorSet/RefGene.pm

Bio::ConnectDots::ConnectorSet::Unigene

in lib/Bio/ConnectDots/ConnectorSet/Unigene.pm

Bio::ConnectDots::ConnectorSet::Uniprot

in lib/Bio/ConnectDots/ConnectorSet/Uniprot.pm

Bio::ConnectDots::ConnectorSet::gse_platform

in lib/Bio/ConnectDots/ConnectorSet/gse_platform.pm

Bio::ConnectDots::ConnectorSet::gse_probe

in lib/Bio/ConnectDots/ConnectorSet/gse_probe.pm

Bio::ConnectDots::ConnectorSet::gse_sample

in lib/Bio/ConnectDots/ConnectorSet/gse_sample.pm

Bio::ConnectDots::ConnectorSet::gse_series

in lib/Bio/ConnectDots/ConnectorSet/gse_series.pm

Bio::ConnectDots::ConnectorSet::homologene

in lib/Bio/ConnectDots/ConnectorSet/homologene.pm

Bio::ConnectDots::ConnectorSet::homologene_xml

in lib/Bio/ConnectDots/ConnectorSet/homologene_xml.pm

Bio::ConnectDots::ConnectorSet::kegg_title

in lib/Bio/ConnectDots/ConnectorSet/kegg_title.pm

Bio::ConnectDots::ConnectorSet::loc2cit

in lib/Bio/ConnectDots/ConnectorSet/loc2cit.pm

Bio::ConnectDots::ConnectorSet::loc2go

in lib/Bio/ConnectDots/ConnectorSet/loc2go.pm

Bio::ConnectDots::ConnectorSet::rgd

in lib/Bio/ConnectDots/ConnectorSet/rgd.pm

Bio::ConnectDots::ConnectorTable

in lib/Bio/ConnectDots/ConnectorTable.pm

Bio::ConnectDots::DB::ConnectDots

in lib/Bio/ConnectDots/DB/ConnectDots.pm

Bio::ConnectDots::DB::ConnectorSet

in lib/Bio/ConnectDots/DB/ConnectorSet.pm

Bio::ConnectDots::DB::ConnectorTable

in lib/Bio/ConnectDots/DB/ConnectorTable.pm

Bio::ConnectDots::DB::DotSet

in lib/Bio/ConnectDots/DB/DotSet.pm

Bio::ConnectDots::DB::DotTable

in lib/Bio/ConnectDots/DB/DotTable.pm

Bio::ConnectDots::DotQuery

in lib/Bio/ConnectDots/DotQuery.pm

Bio::ConnectDots::DotQuery::Constraint

in lib/Bio/ConnectDots/DotQuery/Constraint.pm

Bio::ConnectDots::DotQuery::CsMixin

in lib/Bio/ConnectDots/DotQuery/CsMixin.pm

Bio::ConnectDots::DotQuery::CtMixin

in lib/Bio/ConnectDots/DotQuery/CtMixin.pm

Bio::ConnectDots::DotQuery::InnerCs

in lib/Bio/ConnectDots/DotQuery/InnerCs.pm

Bio::ConnectDots::DotQuery::InnerCt

in lib/Bio/ConnectDots/DotQuery/InnerCt.pm

Bio::ConnectDots::DotQuery::OuterCs

in lib/Bio/ConnectDots/DotQuery/OuterCs.pm

Bio::ConnectDots::DotQuery::OuterCt

in lib/Bio/ConnectDots/DotQuery/OuterCt.pm

Bio::ConnectDots::DotQuery::Output

in lib/Bio/ConnectDots/DotQuery/Output.pm

Bio::ConnectDots::DotQuery::Term

in lib/Bio/ConnectDots/DotQuery/Term.pm

Bio::ConnectDots::DotSet

in lib/Bio/ConnectDots/DotSet.pm

Bio::ConnectDots::DotTable

in lib/Bio/ConnectDots/DotTable.pm

Bio::ConnectDots::Parser

in lib/Bio/ConnectDots/Parser.pm

Bio::ConnectDots::QueryGraph

in lib/Bio/ConnectDots/QueryGraph.pm

Bio::ConnectDots::SimpleGraph::ShortestPaths

in lib/Bio/ConnectDots/SimpleGraph/ShortestPaths.pm

Bio::ConnectDots::SimpleGraph::Traversal

in lib/Bio/ConnectDots/SimpleGraph/Traversal.pm

Bio::ConnectDots::Util

in lib/Bio/ConnectDots/Util.pm

Other files

To install Bio::ConnectDots::DB, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Bio::ConnectDots::DB

CPAN shell

perl -MCPAN -e shell
install Bio::ConnectDots::DB

For more information on module installation, please visit the detailed CPAN module installation guide.

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Changes for version 1.00 - 2005-02-03

Modules

Provides

Other files

Module Install Instructions